Description

write your description here

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

summary

:file

sequencing summary file

*.{txt}

Output

name:type
description
pattern

html

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.html

:file

Results in HTML format

json

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.json

:file

Results in JSON format

*.{json}

versions_pycoqc

${task.process}

:string

The name of the process

pycoqc

:string

The name of the tool

pycoQC --version 2>&1 | sed "s/^.*pycoQC v//; s/ .*\$//"

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

pycoqc

:string

The name of the tool

pycoQC --version 2>&1 | sed "s/^.*pycoQC v//; s/ .*\$//"

:eval

The expression to obtain the version of the tool

Tools

pycoqc
GNU General Public v3 (GPL v3)

PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data